Simultaneous Bayesian inference of phylogeny and molecular coevolution
نویسندگان
چکیده
منابع مشابه
BAli-Phy: simultaneous Bayesian inference of alignment and phylogeny
SUMMARY BAli-Phy is a Bayesian posterior sampler that employs Markov chain Monte Carlo to explore the joint space of alignment and phylogeny given molecular sequence data. Simultaneous estimation eliminates bias toward inaccurate alignment guide-trees, employs more sophisticated substitution models during alignment and automatically utilizes information in shared insertion/deletions to help inf...
متن کاملAn Introduction to Bayesian Inference of Phylogeny
The probability of a high roll is larger for the biased dice than for the fair dice. Suppose that you draw a die at random from the box and roll it twice, observing a four on the first roll and a six on the second roll. What is the probability that the die is biased? A Bayesian analysis combines ones prior beliefs about the probability of a hypothesis with the likelihood. The likelihood is the ...
متن کاملBayesian Nonparametric and Parametric Inference
This paper reviews Bayesian Nonparametric methods and discusses how parametric predictive densities can be constructed using nonparametric ideas.
متن کاملPotential applications and pitfalls of Bayesian inference of phylogeny.
Only recently has Bayesian inference of phylogeny been proposed. The method is now a practical alternative to the other methods; indeed, the method appears to possess advantages over the other methods in terms of ability to use complex models of evolution, ease of interpretation of the results, and computational efficiency. However, the method should be used cautiously. The results of a Bayesia...
متن کاملBayesian Inference of the Metazoan Phylogeny A Combined Molecular and Morphological Approach
Metazoan phylogeny remains one of evolutionary biology's major unsolved problems. Molecular and morphological data, as well as different analytical approaches, have produced highly conflicting results due to homoplasy resulting from more than 570 million years of evolution. To date, parsimony has been the only feasible combined approach but is highly sensitive to long-branch attraction. Recent ...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
ژورنال
عنوان ژورنال: Proceedings of the National Academy of Sciences
سال: 2019
ISSN: 0027-8424,1091-6490
DOI: 10.1073/pnas.1813836116